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Results Found: 12
  • Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of 442 samples of skin cutaneous melanomas from 488 patients. The data was gathered as part of the PanCancer Atlas initiative, which aims to answer big, overarching questions about cancer by examining the full set of tumors characterized in the robust TCGA dataset. The clinical data includes mutation count, information...

    Subject
    DNA Mutational Analysis
    Melanoma
    Skin Neoplasms
    Access Rights
    Free to All
  • SUMMIT - Neratinib Basket Study (Multi-Institute, Nature 2018): MSK-IMPACT sequencing of 86 patients with HER2- and HER3-mutant cancers

    Description

    This dataset contains summary data visualizations and clinical data from a broad sampling of HER2- and HER3-mutant tumors. The data was generated utilizing the MSK-IMPACT targeted sequencing test. The clinical data includes tumor type (based on the opensource OncoTree ontology developed at MSK), mutation count, information about mutated genes, Amplification Status, Best objective response rate, Bubble...

    Subject
    Breast Neoplasms
    Carcinoma, Hepatocellular
    Carcinoma, Non-Small-Cell Lung
    Carcinoma, Renal Cell
    Colorectal Neoplasms
    DNA Mutational Analysis
    Endometrial Neoplasms
    Esophageal Neoplasms
    Genes, erbB
    Genes, erbB-2
    Melanoma
    Ovarian Neoplasms
    Pancreatic Neoplasms
    Salivary Gland Neoplasms
    Sarcoma
    Skin Neoplasms
    Urinary Bladder Neoplasms
    Uterine Cervical Neoplasms
    Access Rights
    Free to All
  • Breast Invasive Carcinoma (TCGA, Firehose Legacy)

    Description

    TCGA Breast Invasive Carcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 1,108 carcinomas from 1,101 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...

    Subject
    Breast Neoplasms
    Carcinoma, Ductal, Breast
    Carcinoma, Lobular
    DNA Mutational Analysis
    Skin Neoplasms
    Access Rights
    Free to All
  • Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

    Description

    TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of 480 carcinomas from 471 patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a cancer analysis pipeline. The clinical data includes mutation count, information...

    Subject
    DNA Mutational Analysis
    Melanoma
    Skin Neoplasms
    Access Rights
    Free to All
  • The Angiosarcoma Project - Count Me In (Nature Medicine, 2020)

    Description

    Dataset Summary Description: "The Angiosarcoma Project is an ongoing patient-driven initiative. This archived Angiosarcoma Project dataset was analyzed in the linked Nature Medicine 2020 manuscript, and is derived from 48 samples from 36 angiosarcoma patients. Angiosarcoma tumor specimens (FFPE) were subjected to whole-exome sequencing (along with matched germline whole-exome sequencing). In addition...

    Subject
    Adenocarcinoma
    Basal Cell Carcinoma
    Breast Neoplasms
    Hemangiosarcoma
    Hodgkin Disease
    Leukemia, Lymphocytic, Chronic, B-Cell
    Rectal Neoplasms
    Skin Neoplasms
    Thyroid Neoplasms
    Uterine Neoplasms
    Vulvar Neoplasms
    Access Rights
    Free to All
  • The Angiosarcoma Project (Provisional): an ongoing patient-driven initiative.

    Description

    Dataset Summary Description: "This provisional dataset is currently derived from 83 samples, including tumor specimens (FFPE and cfDNA) from 62 angiosarcoma patients subjected to WES (along with matched germline WES). This study includes genomic data, patient-reported data (pre-pended as PRD), medical record data (MedR), and pathology report data (PATH). As these data were generated in a research...

    Subject
    Basal Cell Carcinoma
    Breast Neoplasms
    Colorectal Neoplasms
    Hemangiosarcoma
    Hodgkin Disease
    Leukemia, Lymphocytic, Chronic, B-Cell
    Prostatic Neoplasms
    Rectal Neoplasms
    Skin Neoplasms
    Thyroid Neoplasms
    Uterine Neoplasms
    Vulvar Neoplasms
    Access Rights
    Free to All
  • Melanoma (MSKCC, 2018): MSK-IMPACT sequencing of 720 Melanoma tumor samples with matched normals.

    Description

    This dataset contains the summary data visualizations and clinical data of 696 samples of MSK-IMPACT sequencing of Melanoma tumors with matched normals from 696 patients. Clinical data includes: Cancer Type, Mutation Count, Fraction Genome Altered, Primary/Metastasis Sample Type, Demographic Information, AJCC 7th & AJCC 8th Staging, Bone Status, CNS Status, DMT Primary Site, Driver Class, ECOG, LDH,...

    Subject
    Melanoma
    Skin Neoplasms
    Access Rights
    Free to All
  • Desmoplastic Melanoma (Broad Institute, Nat Genet 2015): Exome/Whole Genome sequencing of 20 desmoplastic melanoma tumor/normal pairs

    Description

    This dataset contains the summary data visualizations and clinical data of Exome/Whole Genome sequencing of 20 desmoplastic melanoma tumor/normal pairs. Clinical data includes: Mutation Count, Diagnosis Age, Anatomic Region, Detailed Sample Histology Category, Platform, Secondary Platform, Total Mutations, and Tumor Other Histologic Subtype. The plaintext components of the dataset can be downloaded...

    Subject
    Melanoma
    Skin Neoplasms
    Access Rights
    Free to All
  • Desmoplastic Melanoma

    Authors
    Shain, Alan H.
    Bastian, Boris C.
    Description

    Summary from the GEO: " High resolution aCGH was performed on 10 primary Desmoplastic Melanomas (DMs). DMs are a rare subtype of melanoma known for their pronounced desmoplastic stroma and spindled melanocytes. 10 samples were hybridized to Agilent 1 Million feature two color arrays as compared to a panel of normal male DNA. 6 samples were hybridized to Agilent 244K feature two color arrays as compared...

    Subject
    Melanoma
    Skin Neoplasms
    Access Rights
    Free to All
  • Whole genome sequencing of primary and metastatic Melanoma cases in an Australian cohort

    Description

    Study Description from EGA: "Melanoma is the fourth most common cancer in Australia and the leading cause of cancer death in young adults. The Australian Melanoma Genome Project (AMGP) is analysing whole genomes from melanomas. We include the results of whole genome sequencing (WGS) for a number of datasets that include cutaneous, acral and mucosal melanoma subtypes. "

    Subject
    Conjunctival Neoplasms
    Melanoma
    Nevus, Pigmented
    Skin Neoplasms
    Uveal Neoplasms
    Access Rights
    Application Required